snipar.simulate module

snipar.simulate.am_indices(yp, ym, r)

snipar.simulate.compute_genetic_component(haps, causal, a)

snipar.simulate.compute_phenotype(haps, causal, a, sigma2)

snipar.simulate.compute_phenotype_indirect(haps, old_haps, father_indices, mother_indices, causal, a, b, sigma2)

snipar.simulate.compute_phenotype_vert(haps, causal, a, sigma2, beta_vert, Y_p, Y_m)

snipar.simulate.impute_all_fams(gts, freqs, ibd)

snipar.simulate.impute_all_fams_phased(haps, freqs, ibd)

snipar.simulate.impute_from_sibs(g1, g2, ibd, f)

snipar.simulate.impute_from_sibs_phased(g1, g2, ibd, f)

snipar.simulate.meiosis(map, n=1)

snipar.simulate.produce_next_gen(father_indices, mother_indices, males, females, map)

snipar.simulate.random_mating_indices(nfam)

snipar.simulate.simulate_recombinations(map)